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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300009552 Open in IMG/M |
| Scaffold ID | Ga0116138_1000282 Open in IMG/M |
| Source Dataset Name | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_150 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 32644 |
| Total Scaffold Genes | 42 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 29 (69.05%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Minnesota | |||||||
| Coordinates | Lat. (o) | 47.5028 | Long. (o) | -93.4828 | Alt. (m) | Depth (m) | 1.5 to 1.75 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F017431 | Metagenome | 240 | Y |
| F019267 | Metagenome / Metatranscriptome | 230 | Y |
| F022798 | Metagenome | 212 | Y |
| F023263 | Metagenome | 210 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0116138_100028222 | F017431 | GAGG | MPKTKSKVEHELDRTEILRYLNECGLQPITPRSILVYLDDCLRPVSEEGMQFQLRYMRDRKWVELGIEKRVGQPEIIRWARITADGVDEYDRRAAALGEAR* |
| Ga0116138_100028230 | F023263 | AGGAGG | MLGNQGLTAAKFDTNIRALRGTVMGLPVSNPSTESDFYVGLPSGFNTVPTGVLTQDVVEPGYPLTSEIWLDSTTGNPINGSTPPAPFSSQGRAWGLTLFAPEAEVIAADTTIQAEDDVVIADAYGRVTSIRNVTTGNTANVVGKAKYPPTAQNQRIRIQVTLRQVKV* |
| Ga0116138_100028233 | F019267 | GGAGG | MAASGTSTTLYSFREERRRLYRRIRVDITGLQTGANTIAHGITKRESPAAGAVPIEERVLLTSNVAVHRTQPADATNLYYTVDSGSGTTISVFVTA* |
| Ga0116138_100028234 | F022798 | GGAGG | MSYTTVNNVAAMFPTFTRNGPKGPSDALIQIFIDDVAAEIDAVLQRRFQEAYASLGFTAWQGSLGADQLNILEKINRYGACAQLAGVFETAGIAAAARAAKGFEDTFQEAYNKLNARDQDGKPFAQGGDYDYLFDPLAKVETPRPQLGGAAGGDQQPQSRAEEGSHVNFRKWDRRES* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |