Scaffold Ga0116138_1000046

Overview

Basic Information

• Taxon OID: 3300009552
• Scaffold ID: Ga0116138_1000046
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_150
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 90116
• Total Scaffold Genes: 75
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (61.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): 1.5 to 1.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008540	Metagenome	331	Y
F013506	Metagenome	270	Y
F027820	Metagenome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116138_10000461	F013506	GGAGG	VNCQHLHFQFPAEPFQRWHVIEDRDLPRPLRFRHPRQSGEKPDPKVNFGIEELSARLEHAGVEYIRIALGHDAESFDLACCMVSDGLGGLEVPGDGVWYPVIPWVRDDGFYAVGMREPMPFRDACHLFGFDIPAARPSVPKRIKRDVARGRTSLFGELLETRELNPWDLLHT
Ga0116138_10000462	F008540	GGA	LIARETREENRRELARVLDQISRERASRLPAPPPVSLEAQFQMSIHRIREDVQRAKDVQTAHILRWLQS*
Ga0116138_100004648	F027820	AGG	MLESINPGTTLSKRAARRLIQRAFVLTGRDKRVREHIRTTQLTTLWVLEDWNLAWTVYLHRGRLEVARRPGKHPDVTFSWPTAEEFFHQAERVGDSLVQVEILPALEHPRFFQPLLRGFFTALRHVLSNPVDDQGVSLL*