Scaffold Ga0105238_10106994

Overview

Basic Information

• Taxon OID: 3300009551
• Scaffold ID: Ga0105238_10106994
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2778
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR_3 bacterium SM23_42 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001101	Metagenome / Metatranscriptome	777	Y
F034375	Metagenome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105238_101069941	F034375	GGCGG	LLPALGIALAAAFGIGVAAQSQIAGDQAARSVLDKASPLDRDVRVTWQGPVTSSVAGQARALIRGLGLGSSTEVVLMNPVRLGGVVVRPAAIAPLGSWLTGSAVARLGPCRPER
Ga0105238_101069943	F001101	GAG	MIPELGSLSFWRVVDVPFETCVAAFDSWLPTMNGGELRIGGSWLLGPMEHDRELGTRRIQVRLARGAMYPTLRMRLEIDRWSSSSTALELIPDKLVRPTADYFRAGRLLLDSLTRSLPQHPEVLVTSSIAS*