Scaffold Ga0105238_10000010

Overview

Basic Information

• Taxon OID: 3300009551
• Scaffold ID: Ga0105238_10000010
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 271274
• Total Scaffold Genes: 287
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 149 (51.92%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002548	Metagenome / Metatranscriptome	549	Y
F003710	Metagenome / Metatranscriptome	473	Y
F010067	Metagenome	309	Y
F013826	Metagenome / Metatranscriptome	268	Y
F022212	Metagenome	215	Y
F043999	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105238_10000010193	F003710	N/A	MRVMLIKGMTEQEIRVLQEFRRVAAESLGVAAIKAIKHPAGGGEGPAFSLVDKGMLTTDAARENFALTAKAKEFLSYDPKPEFEEAGSAAEEPVVVE*
Ga0105238_10000010226	F002548	GAG	MGKYAMDSTMEVRSPIFERRRLRRIRMIVELTLNLVGSDMTVSHREARCLVRCARKAILELHPGFEQRYERIVLPYFERMLASRWPHEQAFDDDCCDVVN*
Ga0105238_10000010229	F022212	GGAG	MRRFLVLLALAAVSCGGGSPDASDNSSEWLHVLRHKQAASAPNAPVHAKQAYADTLGAFVVKHPTHSRAREVYQHIQLDFAHELAVVGRHQDAIRIYRAILTHDPKNDAALKGLADSVDHLAVSHEKLLALEKGMSQRDVAHLLGKPIPGWQVTNDRPDSTIESWYYRRTGGGIAGVYFRDGVLFAAEENSQAKIAPLMRQ*
Ga0105238_10000010247	F043999	N/A	MEKPVRRTLLPGVSDAGAPPPVVIDSRVVVARARRRAIVRDVIDLLLLVCVDGLFLRWNHAHVPFLDRHDSLLVLLALNAMLVGYVWLARALPRWTARKVAATWCLAERTRFFRS*
Ga0105238_1000001038	F013826	AGGAGG	MAVCWRCPSCSEVSCEDDVNATGNPVACDHCERPFPQQETLCTVCDTPNPWSRRDTLHFLCRECGTAQTYFSHLPMAG*
Ga0105238_1000001074	F010067	N/A	MTEDDQRSDEARESFAYFSNEYAQALQAFKTIEGQSSTLLLMGVSDELRGFIDQFITMASGTKALAEERDETHFAEWFGELIRKAEVLRGEIVPQ*