Scaffold Ga0115013_10183779

Overview

Basic Information

• Taxon OID: 3300009550
• Scaffold ID: Ga0115013_10183779
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1243
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -17.283
  • Long. (^o): 2.9768
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015102	Metagenome / Metatranscriptome	257	Y
F027536	Metagenome	194	Y
F103094	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115013_101837792	F103094	GGA	MTKKIPEKLNIEVSLSSENSCYVSVKDYTIYVEVSQATNDKPYISFWKKGWEDDRATTVSH*
Ga0115013_101837794	F027536	GGAGG	MRVSPDGWRYKVTPIDRVINDCKRRADEAWWDGNDDEARLLEQEQKLYEQDKEEGVLWVPNF*
Ga0115013_101837796	F015102	GGA	MESEDGKNPNTPFDDATHWVGNLPSKDTDSTKRVTKRLSWWQIKSDILRKKLGMETKWED