Scaffold Ga0115013_10128986

Overview

Basic Information

• Taxon OID: 3300009550
• Scaffold ID: Ga0115013_10128986
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1463
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -17.283
  • Long. (^o): 2.9768
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004850	Metagenome / Metatranscriptome	421	Y
F009959	Metagenome / Metatranscriptome	310	Y
F050305	Metagenome	145	Y
F077194	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115013_101289862	F050305	N/A	MNNLNTTIDKVAMSEFDMHYHQLGDNEKQWCHDEMVNNPKWLKKDWEKPLWSMADKWKAGLPIYKTYK*
Ga0115013_101289863	F077194	N/A	METLTILDFGSGEVHQYHNVNYEKYEMELDEFVSVQLGYNLNEVEYMFHTDKTIYNLTNELC*
Ga0115013_101289864	F004850	N/A	MLDTYEFEIYYGDLEEPLYLTNDKNYICDDMRDFMEELGIVMDEIIYKVEKL*
Ga0115013_101289868	F009959	N/A	MTEQEVIDKVCDKVVNTIYNELDYYMFAELGYTETNDKYVEDADMLIIKVIKEL