Scaffold Ga0115013_10087156

Overview

Basic Information

• Taxon OID: 3300009550
• Scaffold ID: Ga0115013_10087156
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1761
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -17.283
  • Long. (^o): 2.9768
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001479	Metagenome / Metatranscriptome	687	Y
F012353	Metagenome / Metatranscriptome	281	N
F034958	Metagenome / Metatranscriptome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115013_100871562	F012353	N/A	MKLMLYTTGEWKVDPNKDITFPLVRWLFRLFPILDGSDIEINQVDLGDEFAYGFCQEDDGEFLIHIHNRMDLREYVKTIIHEITHVRQTLDGITDSNAREDEAYYLEEQLSKEFWDSYISGTQ*
Ga0115013_100871563	F034958	AGGA	MKKSKVDQMIDNLEVCIDFLGLDDERTGEMLAATNELGVNVEYFCHEFMETSSVELHNPDYLNIAEFNATFWEF*
Ga0115013_100871564	F001479	GGAG	MSKEMLFLCDVLTDWCKKNKFPHRCASDILYSEDTKGRLTGNQVYWLENFISTWDIINQTT*