Scaffold Ga0115013_10077604

Overview

Basic Information

• Taxon OID: 3300009550
• Scaffold ID: Ga0115013_10077604
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1861
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -17.283
  • Long. (^o): 2.9768
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002445	Metagenome	558	Y
F010922	Metagenome / Metatranscriptome	297	Y
F025008	Metagenome	203	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115013_100776043	F025008	AGGA	MTKYILIMKICSVLHGDCLPEYNAGEHETWYDCAAVGTMMTANALSEMGPDLVNNNKIYITFKCQSMVGA*
Ga0115013_100776044	F010922	GAGG	MGKYRTPFANNDVIHLIEQNKEPEQKLWIAVLAKAFDDAFYSTDDRAALEALSWIKHGSDFNYVCGLAGRNPNYVRKRMLDKVIQREASILMQHKQIKEGADNIIKLKLKKRGPVPGTQKRVYDYKWLPKQTHDYVDR*
Ga0115013_100776045	F002445	AGCAG	MSTGRKICPECKGNGYLRTEMNTIVQCLNCWSEGEIDEKIWARDYTPIIPDELQSTQKDD