Scaffold Ga0115013_10033352

Overview

Basic Information

• Taxon OID: 3300009550
• Scaffold ID: Ga0115013_10033352
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2784
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -17.283
  • Long. (^o): 2.9768
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029713	Metagenome	187	Y
F033766	Metagenome	176	Y
F036656	Metagenome / Metatranscriptome	169	Y
F085551	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115013_100333521	F085551	GGA	MSYSIRTRLHHWIETCPCTNFLVKNKKDQEQVDGIWYDVVVVECLVKAEEQP*
Ga0115013_100333522	F033766	AGGAGG	MSDYPYNLTAIATHLRELSLSIAKKLDISEDDAWDLCMEKLESKFLRMKREEDQ*
Ga0115013_100333524	F036656	N/A	MKLCSNQSIPCEFLKGACIFLSDEDEGRYIKDVCVDLEKHSIILIDDEGNGMYWESLRNASIQFQGGR*
Ga0115013_100333526	F029713	N/A	MTNDKYDSEAELKAAKRAEIERLWFNQEATNKELLEAYKALDVKKEDV*