NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0115013_10030362

Scaffold Ga0115013_10030362


Overview

Basic Information
Taxon OID3300009550 Open in IMG/M
Scaffold IDGa0115013_10030362 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2914
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameSouth Atlantic Ocean
CoordinatesLat. (o)-17.283Long. (o)2.9768Alt. (m)Depth (m)30
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026438Metagenome198N
F046315Metagenome151Y
F059875Metagenome133Y
F073760Metagenome120N

Sequences

Protein IDFamilyRBSSequence
Ga0115013_100303621F073760N/AMGFIVDNEITLDLYEMQSASHLGILRCLESEKHKESWGYNYKGSLNDQIAKSISGAMGEVAASKFLKIKFEYHCNVGGVPDLIFKDLRLQVRTQLPKNNN
Ga0115013_100303622F059875N/AMKVLVLIFGVITNDGQIDLVKVPNIELKNINSCEKAIEISRKWVDNPDFDNNPLPHGFYTYKNRVIMLQYCTENGVYSG*
Ga0115013_100303623F046315GAGLNKKLLEYSIKSGYNSSFIKEYMKRNNLLPKEYSFRKASLDLILKRYNKKIIDFVRDTYAPKEQKNKLAQISKILNPKKDAPHYFTVNDLAYDLSTWVNNFNTSNVSISPQFFMGENVQIDCIGELFGNGQIGLHKAKDFHKINIHPKYVSFKAIECQTEHKRGLMMLFEPTKIIDRNANNRTAICQDKKTKVIWFGFLDPQSNGKYNILDKSQSTGKTIGKLAENIELSWSAEVKAAYYPNIYNI*
Ga0115013_100303624F026438N/AMANHINVIGDSYKKFGLKHTSKSTACLPHTIRFFKKHILTPKENSEISNASFSGGTLIHLIVQDSLTKGMKVAEVIKSEKIQNKINEYEPLDEKDKKKFEFIVKSAQETALNHLNNIAELGGQEWKDEIEQVLWTPPVKTYWLMYIDLVSKDLLGDLKNKFGNATLTKTKGWTYTNVKCPDRPFYSDVQQVALYNKATGLKPFLSYASNCDRKLFTQENCEDLSPENLEKALKELMIYEIAWEKKLELADGDLDTLAWLCCPDFSDIKKKSFWWTGVAQEQIDRLLKHYD*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.