Scaffold Ga0115013

Basic Information
Taxon OID	3300009550 Open in IMG/M
Scaffold ID	Ga0115013_10015712 Open in IMG/M
Source Dataset Name	Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009550 Open in IMG/M

Scaffold ID

Ga0115013_10015712 Open in IMG/M

Source Dataset Name

Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4003
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

4003

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	South Atlantic Ocean
Coordinates	Lat. (^o)	-17.283	Long. (^o)	2.9768	Alt. (m)	Depth (m)	30
Location on Map

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Source Dataset Sampling Location

Location Name

South Atlantic Ocean

Coordinates

Lat. (^o)

-17.283

Long. (^o)

2.9768

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004606	Metagenome / Metatranscriptome	431	Y
F008190	Metagenome / Metatranscriptome	337	Y
F017335	Metagenome / Metatranscriptome	241	Y
F018962	Metagenome / Metatranscriptome	232	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115013_100157121	F018962	N/A	MIKIVLEPARNGVIKKVIDDNHGGGREHFTSTDVYESVEGDKNKLDYIKRFFFDLCDDLGLDIGNKFDPQVLDIRADWGTHYDPSIKDIDKKIKRLKSELEELEEWKNI*
Ga0115013_100157122	F008190	GAGG	MEEHIEFNFIYSNDALRVKTFLGNVPRSIECINYMDIFNKLTKNDFYQYEPSDAVVSSYLMRQLQNAIGRNTSTTIFYVLGSLTHDTVGGIKEYVSTLSNKPITYKIYHSPDIIVNGTAELFDDIIEFE*
Ga0115013_100157123	F004606	N/A	MKAHRIFDKGQIVYCLLASHTNPNILLPIKGIIMDSKWDPVNPLYQIRIVKFYDNMKFLKKYFFDMNFRHVFENRARKMILKKEDYKTAKALEERLNEKDRERFYIVVESVMCTKTKTSLSKLFERVQFYMISKNLKEIRETSARPFFKGPLSLDSVREFDARYKKGFYDKFENAKINIDKYLNSLG*
Ga0115013_100157125	F017335	N/A	MDIKSLTLKNRLTDEKTGEQYFDLTAPSFKYIAEQGIKALHYVTQDQAGRIDKISENYFGTGEYIDAICVVNNIFNPFSVEEGDVLVIPNLNQLDLLYRRPNPASRPSESLAQYVNTDRQSVKDQSRVQRLTQKAKTKKDGVKAPIPPNMLQQGQDAKIYEGGKILLGANLKTRNSNS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0115013_10015712

Overview

Ecosystem & Geography

Associated Families

Sequences