Scaffold Ga0115013_10007699

Overview

Basic Information

• Taxon OID: 3300009550
• Scaffold ID: Ga0115013_10007699
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5665
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (22.22%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -17.283
  • Long. (^o): 2.9768
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024093	Metagenome / Metatranscriptome	207	Y
F031892	Metagenome / Metatranscriptome	181	Y
F033254	Metagenome / Metatranscriptome	178	Y
F035957	Metagenome / Metatranscriptome	171	Y
F066695	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115013_1000769913	F066695	N/A	MAELLTDDIITDALSNDGIMEEPDANWLLEYIESEYGGKLDNTTTWSDSKGLKIYSESTADSYDIYFCTYEDKPYVSQDGYYYEDHATWSEQAIEALCDNQNVWIESHIWDDMEYDFNHELEQWWQDVYEDKFNDKKDELIDSGDYYEEKQ*
Ga0115013_1000769915	F031892	N/A	MKTDKFNEIVHELDTHAQETMNAKGPEYTVQDEDVLNNFKATAKKLGVDPLIVWYAYFDKQVSSVAAHVSNHDLNKAEPMISRFGDIINYAKLGYALFTERDKL*
Ga0115013_100076994	F033254	N/A	MDILSMLNYNNMARKHTHEKLWSFSDEHVVDGMIYSHELDKWVTVEEYTEVYYGTL*
Ga0115013_100076996	F035957	N/A	MPKYFDDLTLEQMFEYHDHTYMMADDNRAYENGRRQRDLIEDKVKAQGGWTKELVDLYNKYAPSGMFQKDYDFMQKYNK*
Ga0115013_100076999	F024093	N/A	MAIIKQMNIVAEEIATDIIKQIDKQSDWQVGQFLPEDAESPLTNDTHSYLMRLVARHIANKLDVTTNKYYDE*