Scaffold Ga0115013_10006504

Overview

Basic Information

• Taxon OID: 3300009550
• Scaffold ID: Ga0115013_10006504
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6186
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (5.88%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -17.283
  • Long. (^o): 2.9768
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008425	Metagenome / Metatranscriptome	333	Y
F032332	Metagenome	180	Y
F051263	Metagenome / Metatranscriptome	144	Y
F064641	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115013_1000650410	F008425	N/A	MAKKDITYKQFIDHMDKGNKVYMKKPRSWQKCWFWWESKKEKWFLNKAFDQRKDGRVEPEPSVWITANDMEHHMDHMKRQGYKYHIDE*
Ga0115013_1000650413	F032332	N/A	MEKGKGFSEEFIRSLLLTLEHTNFDEYMKLSYAVMMQSPSAVLKREDAIETKVTAIDEMIKFFEEKEEYEKCTNLQKLKQLLFLDTKTGEDEL*
Ga0115013_100065045	F064641	N/A	MDSQETKDENAIRHYKGTVKQFKQMFDDLADGKDTNAYNSPIRQGYDVHPTRDEDIKSPHWEEGYEDDETQNENHIPTFKNFINENAEEKKA*
Ga0115013_100065047	F051263	N/A	MSISNFKDFGLNEEHEFNPNETKERLKRREQQNIERFRAAQDREDPFAVEYYQMRISIDKLDLKKLEYQTKIHQLKQKYKK*