Scaffold Ga0115013_10004315

Overview

Basic Information

• Taxon OID: 3300009550
• Scaffold ID: Ga0115013_10004315
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7673
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (100.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -17.283
  • Long. (^o): 2.9768
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004493	Metagenome	436	Y
F005813	Metagenome / Metatranscriptome	389	Y
F006217	Metagenome	378	Y
F018289	Metagenome	236	Y
F027536	Metagenome	194	Y
F052260	Metagenome / Metatranscriptome	143	N
F053978	Metagenome	140	Y
F103094	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115013_100043151	F027536	GGAGG	MRVSPDGWRYKVTPIDRVINDCKRRADDAWWDGNDDEARLHEQEQKLYELDREEGILW
Ga0115013_1000431510	F004493	AGAAGG	MRNSVTKNNALDFTNDEWNQLIEGNGLLIMWFIEWNKKVENGKDLQYYQTLQIQDFFKLKYNQSAGCDPWPMKDAKISLDGKFVSEGDDDLEPYFLINTDDGVGYIYPYAFVALPKKSGGHHVVRMD*
Ga0115013_1000431511	F018289	AGGAGG	MTQFTKQQLNTLRKQMQNSLSMFANKTDDLTIEVGNCSYNGGEATFKVKVLLKGAKTRQQQDLEFYAELHKLDLTKTEKLMGEDMQLTGYNSRARKKPWILKRLRDGAEFVADQNLIEKFYKKEETNA*
Ga0115013_1000431512	F052260	AGGAGG	MFVLLATKPLNDGTKGFRFNFFGKKGIVRRRKLQSNGIKFTKGDCMNAYHLGKTTVYTEQSVNKTTARKFCHLAG*
Ga0115013_100043153	F006217	AGG	MDKHEHWTGRAACVQELQHAQRKLEVEELRQFLKDNPHYKYPGMALPNGRIKPLDVCWGSDRTYYIGSDKVKRSKC*
Ga0115013_100043154	F103094	AGGAG	MKNEKLNIEVSLSSEHSCYVSVKDYTIYVEVSQATNDKPYISFWKKGWQDDRAVTVSH*
Ga0115013_100043155	F005813	AGGA	VWAGTQADARKMCGKAYTPVDVPVDKSSLLMFLNANKVGGGAIVDSQNITSEATELNMGAMSWIRWSYDCMCRGQYDDAKEMLRKGLELARKEKTDEE*
Ga0115013_100043157	F053978	GAGG	MHINETTKQMIREIVVELFKEVASKQTFGVSDEVLQLDEHLHDWTGRKIDNYKVKVYGATLEERY*