Scaffold Ga0115013

Basic Information
Taxon OID	3300009550 Open in IMG/M
Scaffold ID	Ga0115013_10003975 Open in IMG/M
Source Dataset Name	Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009550 Open in IMG/M

Scaffold ID

Ga0115013_10003975 Open in IMG/M

Source Dataset Name

Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8014
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (64.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

8014

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (64.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	South Atlantic Ocean
Coordinates	Lat. (^o)	-17.283	Long. (^o)	2.9768	Alt. (m)	Depth (m)	30
Location on Map

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Source Dataset Sampling Location

Location Name

South Atlantic Ocean

Coordinates

Lat. (^o)

-17.283

Long. (^o)

2.9768

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002495	Metagenome / Metatranscriptome	554	Y
F002586	Metagenome	546	N
F005019	Metagenome	415	Y
F008307	Metagenome / Metatranscriptome	335	Y
F040332	Metagenome	162	N
F071633	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115013_1000397510	F071633	N/A	LKVVFLILVIYSGEGGLKYEKIPFAYSLLPITCDEMFEKNVKYVENPNYKEGNGEVWVLTKYKNQNVVAHYCKDSEGNYVR*
Ga0115013_1000397513	F008307	AGCAG	MVKVLKRSSLELAVDFEEIFDGASVEEATQKAHSQKMPSEFAKANITDNKLISANIKLIGEENDELKK*
Ga0115013_100039752	F040332	GGA	MDTNEDSMIYAAKILKGKVNRSSNSRVQITLSTDVAMEFLKNNPELIDQFDKPFMYRPNLPDKLEFIEYLKSQITIKELVSNTDIAKTKIEHWFRKDNCFSYPTINDWNKIKPLLKDIKFDKELTYEVEKDWKEIE*
Ga0115013_100039753	F005019	GAG	MYGDVRQCVKCGMSADIVEKGKDYCAECWFKYFSGESIEEYEKRVKQLDQARKDKYDKS*
Ga0115013_100039754	F002586	AGGA	MIKVKLEANEVELALNIASKRYIGNLRMGKTFSYGYTKGIKSQLTDGILGALGEVAYAKATNSFYNGSYSDDNQFYSDSDFQNNIEIRTQEKKSYNFLLIRPGEKKGTYILIIKDNNEDFNFSIMGSFIYNDDLPPEKLSNFGYQDRPVAYKIELKELKPLEEDVRQDKF*
Ga0115013_100039759	F002495	GGAGG	MSDNGSGKQKDWVLFPYDANNEKAIRIDFSGNVNLDNGNKGTILGVKGASKNGNTKFVKVFAQVGVLFKGDDKFTGEMNYAEAGGHKGLIGWINESGNILSGYKNEPRPKQAKPQSKEIPF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0115013_10003975

Overview

Ecosystem & Geography

Associated Families

Sequences