Basic Information | |
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Taxon OID | 3300009550 Open in IMG/M |
Scaffold ID | Ga0115013_10002538 Open in IMG/M |
Source Dataset Name | Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 10144 |
Total Scaffold Genes | 22 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (45.45%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | South Atlantic Ocean | |||||||
Coordinates | Lat. (o) | -17.283 | Long. (o) | 2.9768 | Alt. (m) | Depth (m) | 30 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F011671 | Metagenome / Metatranscriptome | 288 | Y |
F016155 | Metagenome / Metatranscriptome | 249 | Y |
F036246 | Metagenome / Metatranscriptome | 170 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0115013_1000253813 | F011671 | N/A | MKEEKLLQVVNLSPSESWIERIVEVHPMKQVAIMSVVQVLVFGFMLLAFWGINKFI* |
Ga0115013_1000253815 | F016155 | GAGG | MILECEYCYSRIVIKPDEPIKINFCPHCGEPTEDDTDELDFNE* |
Ga0115013_100025385 | F036246 | N/A | MKAFVIKYWTLLKNFWYWLSSFWTIRYTIHVSFDNQWGNGDDQVYTHVRKIIKSNFKELKFRTHDKKTVHIRGMQGLRYKIEDE* |
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