Scaffold Ga0115013_10001610

Overview

Basic Information

• Taxon OID: 3300009550
• Scaffold ID: Ga0115013_10001610
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12980
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (76.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -17.283
  • Long. (^o): 2.9768
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032681	Metagenome	179	Y
F052260	Metagenome / Metatranscriptome	143	N
F053978	Metagenome	140	Y
F087042	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115013_1000161018	F052260	AGGAG	MFVILATKPLNDGTKGFRFNFFGKKGIVRRRKLQSNGIKFTKGDCMNAYHIGKTTVYTEQVATKRKLCHFAG*
Ga0115013_1000161019	F032681	AGGA	MSFDVKNNMKVRALSKRLNLEVGMPTSMAVEEALTYLTMAFHKRNVDSIKAAELLRWWLVDFQDKELEYFETRLDLAKQVRNK*
Ga0115013_1000161023	F087042	GGA	MGMNIEQICIASFKSMFDERLADGVELTPKYIEMLVKEHCEPYMIVTQGFTHDLLANALDRMDWEYMSYHVNHWQYRENKDVT*
Ga0115013_1000161025	F053978	GGAGG	MHINETTKQMIREIVVELFKEVSSKQTFGVSDEVLMLDEHLNDWTGRKIDKYKVNVYGATLEERY*