Scaffold Ga0115013_10001050

Overview

Basic Information

• Taxon OID: 3300009550
• Scaffold ID: Ga0115013_10001050
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16243
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (44.19%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -17.283
  • Long. (^o): 2.9768
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012584	Metagenome	279	Y
F016820	Metagenome	244	Y
F018189	Metagenome	236	Y
F037769	Metagenome	167	N
F058913	Metagenome	134	Y
F087049	Metagenome	110	Y
F087060	Metagenome	110	N
F088913	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115013_1000105013	F058913	N/A	MKMNLTKEEARWLDDKWNDFYYYFQVEDMFEKDQEIFRNIGKKLSEVKQ*
Ga0115013_1000105016	F018189	GAGG	MELSKEQMEKVIYELECNYNSKIFDDENLVEIINLFKNYLNSGEN*
Ga0115013_1000105021	F087060	N/A	MTQSHTTSNDTSAKQVVRTLSGITKGKPVVTGNAPQTKKFDPVADQDNRLMQMLELSLAIKDKKSEYDDLRKSFTNDLKAALDDNEENPKIRHSENDRVHVYLSKRRVYKYSDKLIAKRLKLEAQMADLKDEEAKEVRHNKAELTKETFTVSFKG*
Ga0115013_1000105026	F037769	GAGG	MRYIQTQTDKEDEKLLRKLLSEKMPEKDADKIISHVFSNLIKWTYEDAVLHLTQVFNFTEEECNRLIKEYDILSSTTKEVIMNPPPNFNATAPNDVKDYSANLWQARKCLSDAKKLISATALTPRDYENDEDFHEALLHRLHIAEHFVNINRYIDEHLDFAKAHIPPQTP*
Ga0115013_1000105027	F012584	N/A	MKLKPYLPENTFILNEDSLPKEHDTDRFGKIMVFRKDVGWSVISLTDAVQFLAMKHTHWTYTPDTPHD*
Ga0115013_1000105028	F016820	N/A	MTKKEFSYIVFSKAGDNVQEIVGVYKDLDGAAYGAKTALSTLFPNHGDKAEIIRCEIISTEEARVTYEKTKPRDIFEKCEDGFCPMPTPQTQEVS*
Ga0115013_1000105032	F088913	N/A	MTVPSQPKYKVNDRVRIRQVLKTSNRHVMINGKYVSAKIRKGIIKEVTLKQNSCGAKIPHYQVLWDHQSSPSLVSQHRIELENEVSKM*
Ga0115013_100010508	F087049	GGA	MNKELAQYINTLLAEKQREVLSKQAYLDKIDRSVEIYFTEYQEIEYELGMIYKAQKAMDYIIEEDN*