NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115013_10001050

Scaffold Ga0115013_10001050


Overview

Basic Information
Taxon OID3300009550 Open in IMG/M
Scaffold IDGa0115013_10001050 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16243
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (44.19%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameSouth Atlantic Ocean
CoordinatesLat. (o)-17.283Long. (o)2.9768Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012584Metagenome279Y
F016820Metagenome244Y
F018189Metagenome236Y
F037769Metagenome167N
F058913Metagenome134Y
F087049Metagenome110Y
F087060Metagenome110N
F088913Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0115013_1000105013F058913N/AMKMNLTKEEARWLDDKWNDFYYYFQVEDMFEKDQEIFRNIGKKLSEVKQ*
Ga0115013_1000105016F018189GAGGMELSKEQMEKVIYELECNYNSKIFDDENLVEIINLFKNYLNSGEN*
Ga0115013_1000105021F087060N/AMTQSHTTSNDTSAKQVVRTLSGITKGKPVVTGNAPQTKKFDPVADQDNRLMQMLELSLAIKDKKSEYDDLRKSFTNDLKAALDDNEENPKIRHSENDRVHVYLSKRRVYKYSDKLIAKRLKLEAQMADLKDEEAKEVRHNKAELTKETFTVSFKG*
Ga0115013_1000105026F037769GAGGMRYIQTQTDKEDEKLLRKLLSEKMPEKDADKIISHVFSNLIKWTYEDAVLHLTQVFNFTEEECNRLIKEYDILSSTTKEVIMNPPPNFNATAPNDVKDYSANLWQARKCLSDAKKLISATALTPRDYENDEDFHEALLHRLHIAEHFVNINRYIDEHLDFAKAHIPPQTP*
Ga0115013_1000105027F012584N/AMKLKPYLPENTFILNEDSLPKEHDTDRFGKIMVFRKDVGWSVISLTDAVQFLAMKHTHWTYTPDTPHD*
Ga0115013_1000105028F016820N/AMTKKEFSYIVFSKAGDNVQEIVGVYKDLDGAAYGAKTALSTLFPNHGDKAEIIRCEIISTEEARVTYEKTKPRDIFEKCEDGFCPMPTPQTQEVS*
Ga0115013_1000105032F088913N/AMTVPSQPKYKVNDRVRIRQVLKTSNRHVMINGKYVSAKIRKGIIKEVTLKQNSCGAKIPHYQVLWDHQSSPSLVSQHRIELENEVSKM*
Ga0115013_100010508F087049GGAMNKELAQYINTLLAEKQREVLSKQAYLDKIDRSVEIYFTEYQEIEYELGMIYKAQKAMDYIIEEDN*

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