Scaffold Ga0115013_10001005

Overview

Basic Information

• Taxon OID: 3300009550
• Scaffold ID: Ga0115013_10001005
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16634
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (20.51%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -17.283
  • Long. (^o): 2.9768
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003492	Metagenome / Metatranscriptome	483	Y
F015742	Metagenome / Metatranscriptome	252	Y
F100986	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115013_1000100515	F100986	GAG	MTRRKIYEHLIGTNVFGIRDKIKQFKKARRKRKNEKI*
Ga0115013_1000100523	F003492	N/A	MAELLTDDIIIEKLEQDGFMEEPDGPWILEYIEEEHGGKLDNTSDYIDDKWTLKIYSESTYDSYDIYWCTHEDRPYVSQDGYYYEDYSDWSDKAVDELTSGSDVWIENHIWDDMEYDFNYRLGEWWQDVYQELFDERKEELLDSGDYYVEKED*
Ga0115013_1000100527	F015742	N/A	MDSKKAYEMIKEDIVDRESAYLCTELERALDRIINYTDPLDDTMFRNIKAPAIKLLKEWHL*