Scaffold Ga0115013_10000273

Overview

Basic Information

• Taxon OID: 3300009550
• Scaffold ID: Ga0115013_10000273
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33143
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (12.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -17.283
  • Long. (^o): 2.9768
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008190	Metagenome / Metatranscriptome	337	Y
F017335	Metagenome / Metatranscriptome	241	Y
F018962	Metagenome / Metatranscriptome	232	Y
F022460	Metagenome / Metatranscriptome	214	Y
F056630	Metagenome / Metatranscriptome	137	Y
F076611	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115013_1000027318	F017335	N/A	MNIKSLTLKNKLTDERTGQQYFDLTAPSFKYRRELGVKALHYVQQDQVGRMDKISQLYFGTGAYVDAICVVNNIFNPFVIQEGDILAIPKLDQLDLVYKRPNPAERPSATLAQYVDTGQQSEKDQARVQRLIQKAKTKKTGVKAPIPPNMLQQGQEAKIYEGGKIKLGANLPSRNRTNTES*
Ga0115013_100002732	F076611	N/A	MAQNLLDKASYSLVRTNPKLTGNVKIVSDGTDIYLESFSANTRLSSQKFKAFKVDGTSTYDQDVYRFFDFGKFPKESAYEIFQEYENDAILSNYGNQYEMFYCAGTRSIASESYEESLGTLAPLWLNEQIPNYFVIFRLDNPAAVNNFRAATPNENFTNAQTSAEFNKNVLENCTAIKTFDLTEGTALGSYIRNYRNQETFPEVPLNITWRKDEPILWNGISYASGGFTSAGNFAYKDLITKDSTIIQDEYLFTQGFQNNGIILANLLNLEFLFDDPTATDYTVNRYFGMYVNDIEEGKFDISGEAFYKGTSVEKTQQPTITNITEVSQFLNTPFVMTNENGILLYLDPTKTETITGLPTPKRVDEVESIFFVKDKEDDFHTIKKGSTWGENQIRLFDTEVDISLFTGYKDPDTFANASVVSRAGVAQMYIKVLDNIQEGASIKFYDGNDFVGEIFANSTLAPIAGKSFERFFNPTGTIQEVAQAITSAINKGIDENERFFVASYNDSTVYVKSRFSGTRFNRLNFKMATTFPELFNQTETYPATLITDPNKNFVGGNDVQNSLLKVTLGDQDRFVPGDFVQTTGGYTVIGDWVPYTDEPIYNGLDEIIGYTDIDKYAIITCNDNQIMVTRSNQVALYSDYKPSFGRFSFFEVRDFDFDFYSTLYSEEGELNFEYSHYNQLKPGAVQPYSTTPPFVDYTGISKNPQIRNFYDNGGFYNLIGLLGDAEDQNPNDEYIKSEYIRLEENFLTSQAAVSRIAPYINKWGWVNDGKDVRNHPYRLNVNEAFGLNNFAPSKWDKIQEASGYTHEWYYLSEFPNYFSNDAIKSSWSYIDTAPTDNIEANPLTGQAFVPGTFQNVNKDYFNDYFIVQKFTSGGTINLIDRQLRYGRFEGGDEKNFSETFLRGVRIIAKPKAIGTEKADFNARSLSYVNNGSLNDYRFSAILVPNLPDKPEFQVKFIKNEKWKTIVMLISVDYDVPCMAPSGSIDRTSLYSLNSNFKTNADCEPVIGGTGEYEYETTQVRGAISLATSFINSDGIYEIRWQPDINGVAPDLVNDIRVLQNGDFGNIKFNIGTDQYSITGITDVVSKSILKANNFVKNTTFPVSPLPLSNPGNQELRQATYNISKGGYEQFQNRLTAATFGNIFDAVNQGNPSIIYETINTNGEQVRNADGTLAQTFGIELRSQADILKSIYIGILPDPAKPTAFNLTDVVGYDLSLQRKPRITPIARHAGYYAPYALPLLSFRDPYQELDFDEITGGTGTVNIPDAAYKLKVMELCKYKNAQFNSKDPKFGQIQNFFYHKVNEQDPSTVLELSRESAFPSLYPLINEIGIDYKDFYAFASNWEPAYFTKSIDKSQIEKIIGTRSMYERKSFFGSKYLKVPERIVLDTFKPDPFVKGAIRQPSLIDGTFMYQNQASVTVNKRIKKLVGTRQIRAIKKKPSAPIETFYLFNQKRLIEYLFTPIKEEFLKYIKPEFGFGDLETLDDDVTQYIKENILKLYKIEKVDFYTLASRTKGGSTYSTAELTDAQKIANGLTINNNVASKTLNTNPFDLKLIYNKRTGFSESYGFSVTIVKK*
Ga0115013_1000027321	F008190	N/A	MEEHIEFNFIYSNDALRVKTFLGNVPRSIECINYMDIFNKLTKNDFYQYEPSDAVVSSYLMRQLQNAIGRNISTTIFYVLGSLNKETVGGIQSYVESLSDKPITYKIYHSPDITVNGTAELFDDIIEFE*
Ga0115013_1000027322	F018962	N/A	MIKIVLEPARNGVIKKVIDDNHGGGREHFTSTDVYEVNENDKNQYSYIKRFFFDLCDDLGLEVGSKFDKTVLDIDTKWGTHFEPTEKDIEFKIKRLKSELKKLEEWKNI*
Ga0115013_1000027324	F056630	N/A	MQKDNIKETSEEVETKVHYQWIKGDESGNVVTIKEEGSKWITFNEGGRLAKDLKDEFLQPLDPDIAGEFVNTKALGTDPLNVSAPPINDSIPKKEISPIRVLFNKQKKNSKVKLLLEFPVNIPQKDVYELMSTSFDKDEVNNILQSFILDQLSEDEISDCLHNSVQSLIESKYKGE*
Ga0115013_100002737	F022460	AGGA	MSTVKNNRKGFPSLYRATYEEGWVVKNTGYDYSKTLLNKTMSKYMFRNRHLKTFLEDYLNPIMVFYVNKVKYLRIYFNFAVPKWYQKIN*