Scaffold Ga0115013_10000251

Overview

Basic Information

• Taxon OID: 3300009550
• Scaffold ID: Ga0115013_10000251
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34711
• Total Scaffold Genes: 77
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (68.83%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -17.283
  • Long. (^o): 2.9768
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000993	Metagenome / Metatranscriptome	811	Y
F002586	Metagenome	546	N
F003365	Metagenome / Metatranscriptome	491	Y
F004376	Metagenome / Metatranscriptome	441	Y
F008307	Metagenome / Metatranscriptome	335	Y
F043149	Metagenome / Metatranscriptome	157	N
F057681	Metagenome	136	Y
F066150	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115013_1000025151	F043149	GAGG	MSLRNSNTRLYTKLDKAHKKIMGARENGRQCVITLQNFKEYNQLFRRIVEAENKDARFLYT*
Ga0115013_1000025152	F008307	AGTAG	MTKVIKTSSIELAADFEEIFDGANVEEATKKAHNQKMPSEFAKVNITEHKLISANIKVIGEVNDELKK*
Ga0115013_1000025159	F003365	N/A	MVSMLKKIGKEWTKKEEGGMFTADHLSPSQLNKNIDQWFFDYCKLTAAERKKLKPNLKMIFGGLAGQAMQDIITENLTLEQVMKGKK*
Ga0115013_1000025161	F002586	AGG	MAKVNLDPNDVELAYTIAQKRFIGNLRMNKGFSYGYDKNLKNQLYDGFLGALGEVSWAKWTNSYHNASYTDNLQRYEDSDFQDNIEIRTQNKKSYNFLLIRPGEKKGKYILIIKNDDKDFNFNIIGSFIYNDNLPPEKLSNFGYDHRPAAYKIELNELTPLEDNERQDKF*
Ga0115013_1000025167	F004376	AGGAGG	MKCLDCGCDEGTLLKEFDNEKNYSWFELSEMTEVCVSCGSENIKLDKEG*
Ga0115013_1000025168	F057681	N/A	MKKYTKKLFLDYASAFDYYDEMKETMQSWSLKDFHKFYDFTHKDWESGKEIKYKEG*
Ga0115013_1000025171	F066150	AGGA	MKILANYELKDMGTPIKETSCWLFFQKGKIAKHTISRFHYKSEIDKFRKELAFAKYQPINNTIN*
Ga0115013_1000025172	F000993	N/A	MFNESTKGEKMTKLHHTEYKKNYKNYILSTIEEDTEGKPIKTEQEKINYIFDRFNSEYGFMVERVGKQKTMTEWLQGLALDIEYWNDNIVPLAIKMGSIDENPSEKLKAKVIDNYWSFMANVILSFEPKERNQ*