Scaffold Ga0116107_1125177

Overview

Basic Information

• Taxon OID: 3300009548
• Scaffold ID: Ga0116107_1125177
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_100
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 733
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): 1 to 1.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016632	Metagenome / Metatranscriptome	245	Y
F027079	Metagenome / Metatranscriptome	195	Y
F078122	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116107_11251771	F078122	N/A	LAHPDPVVPSNRLGLTLGIIIAAVLGSTGMGALIGLASGMAHWIAHLFA*
Ga0116107_11251772	F016632	AGGAGG	LTGILETFVLVEVGSAIGFLANWRNKVLKTKVNFFRQPNNRPSPFDKVLRGKVGRAVTRQDRLRLQLADGLVNLIRKLVQSEAFRQVVRGLALAHSPMRQALRKKGGRTW*
Ga0116107_11251773	F027079	AGGAGG	VIKSFLNLCLILFLDMLAYMVAIVAAAAVAWAAVCGARWIFAAFRNSAIALWARQRRKEMYAHATR*