Scaffold Ga0116107_1047832

Overview

Basic Information

• Taxon OID: 3300009548
• Scaffold ID: Ga0116107_1047832
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_100
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1471
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): 1 to 1.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007120	Metagenome	357	Y
F015428	Metagenome	254	Y
F047437	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116107_10478321	F007120	AGGAGG	MRNLIVALSAACAVVAYYFGLRYFSGRDLGFTPARKYVQSLAKNLLHTELTAAREAGTTPQATTEQAA*
Ga0116107_10478324	F015428	AGGAGG	LTGILELFALVEMGSGIGFLVRWRNRLLASKVNYFRPPHNRKSPLDKLVRARIGPIITRQDQVCVKLADALTVLVRRLVMLDAFRQLMRALALPHSPLRRRLRGQRRLL*
Ga0116107_10478325	F047437	N/A	GWHWRRLRWAVVAASEAAQGHEANGLPPGSKEFKTLFDEVVRKVQEYSTESGDPLDTLQARLPALCALERLACPAPTVPRNKAGLTVGILIAAVLGPIGIGTLIGLGAGMAHWIARLFG*