Scaffold Ga0116107_1002105

Overview

Basic Information

• Taxon OID: 3300009548
• Scaffold ID: Ga0116107_1002105
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_100
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10811
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): 1 to 1.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007097	Metagenome / Metatranscriptome	357	Y
F008672	Metagenome	329	Y
F010661	Metagenome	300	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116107_10021052	F008672	AGGA	MWTSYYNAGLSKQVVRQLLAVVNRDIQAALDLVSGVPGSFAPFAEYDLALLPVQQFPAMLLTPDTVTFDEEANCTLHQTMRLTCVIAVTHQDRNTLAEMSQDYVRAVRAVLDTLWESTPGDFLLTNLPLPSPPFPSGALSPGLASGKLMKIFAEGHTFEEIRRRPQSGFAMAVTMTILVELEES*
Ga0116107_10021054	F010661	AGGAG	MGKNTNGVATGADFRKLAEAGAFEEPARVVLPKSGFEVVLRRPTKFYWALRRSEWPRELREKLDLVGVGVRPELTADETLLLVREDQQMLNEAFVDPTPSLNPGLTQFDPNWLPKEDAEFILKYLRGQVLANGQDLDAFRPSEPGHPTGSGTDGALVREDPERDVIPRRGCLAS*
Ga0116107_10021059	F007097	AGG	MSQLTLSAIPGFFDLADSAIAAGQPLTDDSMLKISHNAKFGTVRSKLIFMGFYANGNTIPTPIDPDDGYAYSRAECQFIWMIYSNRSPAPGFVPGQATPPAQSTSQPGQLYNFPGGWDINDATGLVTFRTTYWQNGNEVVNNDGIIKVYAVCLRLSLNNAN*