Scaffold Ga0116107_1002008

Overview

Basic Information

• Taxon OID: 3300009548
• Scaffold ID: Ga0116107_1002008
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_100
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11170
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): 1 to 1.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042698	Metagenome	157	Y
F083583	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116107_10020082	F042698	GGAGG	MAGITVSSASPDLITDNRGNFPALATLTVTGMTGGATNTVAHGLPRVPRRVWFTGIASGANAAACSLDTSSVAAGFDATNIYIFTPAAVTSVLVHVEY*
Ga0116107_10020085	F083583	AGGAG	MSDITGIDQSYHLNYNIEIGKFTCLAPDSTVYADGCNVPSGANAQFLGIAQESILPDAMADYSGGVYTLASGTAWPTGSIPSSGLGRNIRTRQFGISRVVASGAITRGAYVNIANAQGQIKAVNESEGTLVYVVGVALDAAVNAGDVIRVLVIPFAMRA*