Scaffold Ga0116107_1000004

Overview

Basic Information

• Taxon OID: 3300009548
• Scaffold ID: Ga0116107_1000004
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_100
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 360992
• Total Scaffold Genes: 366
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 222 (60.66%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): 1 to 1.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005808	Metagenome	389	Y
F014936	Metagenome / Metatranscriptome	258	Y
F038044	Metagenome	166	Y
F049365	Metagenome	146	Y
F075569	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116107_1000004130	F049365	GGA	MNLEQVKREVKALGKSPITEKAYPITSDWVPLPDVLAILNRFEKHWKKYEDSKKGASEAKLITEIIGES*
Ga0116107_1000004144	F038044	GAG	LKLVGVSLLIFGVYDAKVYWYALTKGEGAFDFFGRELPARHRGVKIGFTSVLVFYFAVGTVMLIFG*
Ga0116107_1000004225	F005808	N/A	MVRKEIFGKSERKVLEAYLSGKRLKGYTTLFTRIRQLGLAEIIEGCEHDLELLRKLAKVIDL*
Ga0116107_1000004318	F014936	AGTAG	MSNRIFLCSCQKCGTRFDFTGNYEKFNEFLDSKNFTCPGGHTESRSPRAFVKLVTMSESKVILEWKPTVGRNYVDVLDSMTARIKGMQIDHLGSGLYIDRRTMKKYDYEEDAKGVRHYFEVLQQHIRNSA*
Ga0116107_1000004324	F075569	AGGA	MVKQTKIKGKLREHTAVIDSAAPLILGFVAYSVAAVSTFSIPQLTHVRLDPLEIALLTSVAGLLVIGLGYGSIVLLGGICSLNIAGLIGRLTKTKQVIRPKEEKLLHLGKALIAKSHLVYLPLVLFFTSIALGWDIYSADPSRTPSTTAGTRPSTLRLVLHSLNFLATPQRAIGVLFSLRLTPALVAITVISGLVPSIALPYFRRFKIIGINSGPFHSTLLTAVFGSIIGLNIVVSLLGIFYKVLSAGAPTSYHYALIVLIGFSLHYSAGTYIGRGKAESIILRRLAKGRYDRNRIVVLDRTLNPHAETIKLGSLLRPQLD*
Ga0116107_100000486	F075569	AGGA	MVAQTEIKGKLRRHGMVTDSTAPLILGFGAYIVAAVSTFSIPQLTLVGLDPLGIALLTSIMGLLVIGLGYGSIVLLGGICSLNIAGLISRLTKTKQVIRPKEEEPLQLRKALIEKSHLVYLPLVLFFTSIALGWDIYIADPSRTTTSKPAMLRLVLRSLNFLATPQHATGVLFSLRLTPALVAITVISGLAPSIALPYFRRFKIIGINSGPFHSTLLTAVLGPIIGLNIVVSLLGIFYKVLSAGAPTSYHYALIVLIGFSLHYSAGTCIGRGKAESIILQRLANGHYDGNRIVVLDRTLNPNAEAIELGSLLRPQLED*