Scaffold Ga0116136_1018320

Overview

Basic Information

• Taxon OID: 3300009547
• Scaffold ID: Ga0116136_1018320
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2345
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): .4 to .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031336	Metagenome	182	N
F039920	Metagenome	162	N
F044872	Metagenome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0116136_10183202	F044872	GGAGG	MNTGLLNSFASMVKGSILVTDAIKAAFSKFEGGIPSDDQVLVAISEVVFTVTLNKDARQVLSFYLIQLYANQLFISDPSSEFGDCMRIARREIDTLLSFSVLDRIAKYVWEHREQFLMLWTVYAENSAAHPESTSDILGATLTESIQLLEAA*
Ga0116136_10183203	F039920	GGAG	MIDVQALDRTGRRQVLHGLLAQYNLGSESAKVALGMAHQNLPGFTALMERNVRLMRPGAAMEKTLQAVLARPAKPKFRRAAPEVNHSSVRFVGLDKLKF*
Ga0116136_10183205	F031336	AGGAG	VLNGDVIILNPPKDPSWFSDASQSVSLFFWEHSDLVPLLMAEVALAVLIFAGFFWWERRKSKQAVQVGELERLYSTDPIPWPR*