Scaffold Ga0116136_1017990

Overview

Basic Information

• Taxon OID: 3300009547
• Scaffold ID: Ga0116136_1017990
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2371
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): .4 to .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F005112	Metagenome / Metatranscriptome	411	Y
F015428	Metagenome	254	Y
F078122	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116136_10179901	F078122	N/A	TLFDEVVRKVQVYSTESGDPLDTLQARLPALCALERLAYPTPTVPRNKAGLTFGILIAAVLGPIGIGALIGLGAGMAHWIARLFG*
Ga0116136_10179902	F015428	AGGAGG	LTGILELFALAEMGGGIGFLLRWRNRLLASKVNYFHPPHDKKSPFDKLVRAQTGPVITRHDQLCVKVADGLTVLVRRLVMLDAFRQLMRAVFMPNSPLRRSLRTEKKVIYG*
Ga0116136_10179904	F002761	N/A	MVWATLGKLNELVHFVGFKKANPRQAVLRWINAHKVVTITLTEAVNYSVHGISSPLGVTFALGGTLVNALMVMFIVPIWCRLSNLELR*
Ga0116136_10179906	F005112	AGGAG	MSLVTRYRLFWAALMAALLGLAFWKNSRSYPRKSRLWRLGKAIIDTGLVALMVIYGPALLLMYVVIWLTSPFKNKIIQGTTAFASILVVTHLAGVVFESVAVLGVFAVDLLTGQVLARMDKREINKLKKAA*