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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300009547 Open in IMG/M |
| Scaffold ID | Ga0116136_1009246 Open in IMG/M |
| Source Dataset Name | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_40 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3712 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Minnesota | |||||||
| Coordinates | Lat. (o) | 47.5028 | Long. (o) | -93.4828 | Alt. (m) | Depth (m) | .4 to .5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008672 | Metagenome | 329 | Y |
| F010661 | Metagenome | 300 | Y |
| F011724 | Metagenome | 287 | Y |
| F042698 | Metagenome | 157 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0116136_10092462 | F042698 | GGAGG | MSIAVSTANQDLVVDNRGYLPALATLDVTGMTAAATNTVPHGLPRIPRRVWFTGIASGANAAACSLDTSSVAAGFDATNIYIFTPAGVTSVLVHVEY* |
| Ga0116136_10092463 | F011724 | N/A | MSYCTVDDVCTAFPRFVRNAANSIQDTQIQDWIDDRKARIRGAFLARLIDPDTLALTVDAGNFLRALNRDGAIADLGDALQGDVTLQPGEYSLAGSHRQSFERQIEEIKEGLYDALFSGLARHVEIEPLLGGIAGGETDRSTALDRGEDKAFSKNQVF* |
| Ga0116136_10092464 | F008672 | GGA | MAWISYYNAGLSKQVVRQLLAVVNRDIQAALDFVSGVPGSYAPFAEYDLALLPVQQFPAILLTPDTVTFDEEANCTLHQTMRLSCVIAVTHQDRNTLAEMTQDYTRAVRAVLDTLWESTPGDFLLANLPLPSPPFPNGALSPGLASGKLMKIFAEGHTFEEIRRRPQSGFAMAATMSIIVEVEET* |
| Ga0116136_10092466 | F010661 | AGG | MSKSNSIATAADFRKLAEASAFVEPQRVLLPKSGFGVVLRRPTKFYWALRRTGWPCELREKLDLVGVGVKPELTADETLLLVREDQQMVNEAFVDPKPCLNPGLTQFDPNWLPKEDAEFILKYLRGQVLANGQDLDAFRASEQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |