Scaffold Ga0116136_1000052

Overview

Basic Information

• Taxon OID: 3300009547
• Scaffold ID: Ga0116136_1000052
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 75727
• Total Scaffold Genes: 86
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 58 (67.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): .4 to .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005808	Metagenome	389	Y
F007065	Metagenome / Metatranscriptome	358	Y
F080778	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116136_100005218	F005808	GGA	MVRKQILGDWERKILVAYLKGERLKGYTALLFHIRKMGLNAIIEGCEADLKILRHLAIKEKGE*
Ga0116136_100005258	F080778	GAG	MDDKQTRGQCEQLEVAWQVLNDATVELSSHIATLSPDIYVSLRGAKDLISLCKSHPKLADLTPATVDSHEGYCVACCGSDIVGRIKCELRSVEDLLILKAMNELGSKDALKLQEKTMQAWQWTKPLTVTTR*
Ga0116136_100005268	F007065	GGCGG	MLNQKLADMLKDQLDHEEHETEVYARKVRETKHSVAKLLYAKLMRDSMQHADVIQCAISYLSTDKWETLAPINETREDILELMDMEEKALRLFTSATSQVRDPHLKTMLTMLALDEEQHYAMLRYLLESFVDKKEVLEV*