NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115006_10547099

Scaffold Ga0115006_10547099


Overview

Basic Information
Taxon OID3300009544 Open in IMG/M
Scaffold IDGa0115006_10547099 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean- Svalbard ARC20M Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1014
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean
CoordinatesLat. (o)78.8697Long. (o)8.1122Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023218Metagenome / Metatranscriptome211Y
F087436Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0115006_105470992F087436N/AMSKFKKKFGKYFEFKNTTNGTDYFLRGLATILFLIPIGIFVGIGIAILNSQPVIAAILIGLASLTLVPMIWFSLATSYKRINAFFPGKAGWLVAVTFIYSFILEAFNPTQSMNLLDEPAGTLPNGDYITYLVLVIPSLVWSLYLLFGNSKVKKHIG*
Ga0115006_105470993F023218AGGAMIFPSNKRKARYINKKLYLIHGVIPIDRVKNAIMIKEWLGVDTAFKVQREGAYWFCEEIQEAEWEDVN*

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