Scaffold Ga0115006

Basic Information
Taxon OID	3300009544 Open in IMG/M
Scaffold ID	Ga0115006_10025619 Open in IMG/M
Source Dataset Name	Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean- Svalbard ARC20M Metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009544 Open in IMG/M

Scaffold ID

Ga0115006_10025619 Open in IMG/M

Source Dataset Name

Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean- Svalbard ARC20M Metagenome

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4920
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

4920

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean
Coordinates	Lat. (^o)	78.8697	Long. (^o)	8.1122	Alt. (m)	Depth (m)	10
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Arctic Ocean

Coordinates

Lat. (^o)

78.8697

Long. (^o)

8.1122

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F044922	Metagenome	153	N
F074430	Metagenome / Metatranscriptome	119	Y
F080925	Metagenome / Metatranscriptome	114	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0115006_100256193	F080925	N/A	MPKVEDVKHTGPILKHKQSKTEILPRLSSRICVAGPSGVGKGVLVMQLLTNPEFYRGCFERIYYFSQSAKVDSNLLGLKAYCEKELGQTEECLFSEFDEGFLRELLDRQLKITQYLKAKGAKKAMGVCVVIDDFIDMPSVVRKANGVLSSIAIRGRHGNVTCFYMTQKYRALGTEIRTNFNALMFFRQRSRFDLEAFLEENSAIIPKEQLYQMYVKATNKDHGFLFCDLMQSNPDRMFYSSFNARLVPQSHSFSLLGVSADETE*
Ga0115006_100256195	F044922	N/A	MESILSGGEDFLLPGLSYDLSGDQASYVVSRRQSQINSQVPTAGPDAVRQVSFNIADPSGFLDLASLCFSWTVVNNHATAPLQMLSAVPHCCWSRMIISISSAIAEDIQYLPRLEEMLNRFLPLEKRRAASAMGFGLASGTENGSDHLARTIAANGGEQRVVWRPLSSGILNCGKLFPGMLLGASGLKITLEIPAASEIARDHANDSQSFSYKDLICNIDSLQLEESISSQYANMLLSGRSIMIPYSTWDNTLQHLTVTSGSQTCNIAKNFTRLSTVFASLAQEEAAVTADLAGVQGKLQNQFYLGDQAAGDVESFITVNNKRMPDFNTVGCQMHMKRLLSAMGTYSSVAHASNINDVSYGCVKGTVAKSFVTAFDMEKAAHHGASSTGESLATGGILSVNLLKVGSAGASPSRAYISCLYDSVCELKDSGAFIYS*
Ga0115006_100256196	F074430	GAG	MLPIAEEVQVRGRQMKPEGPMAEKAKALLRKQEHGINMGEARVYLGRFAKSFAQVKQKAKNAEKASSVPAPKSRTYDDIEKEVASSTEAVPDPNESVRLRKKPQFPAGAFLKRERLDSEGRKSLRYQGMPIRV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0115006_10025619

Overview

Ecosystem & Geography

Associated Families

Sequences