NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115099_10850418

Scaffold Ga0115099_10850418


Overview

Basic Information
Taxon OID3300009543 Open in IMG/M
Scaffold IDGa0115099_10850418 Open in IMG/M
Source Dataset NameMarine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_20Mar14_M2_3um Metatranscriptome (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)689
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)36.6882Long. (o)-122.386Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028817Metagenome / Metatranscriptome190Y
F103306Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0115099_108504183F028817N/AMKSNLNALYGAIQQTDRLLEKIRGGKDEKQPMPAEKEKALNIATT*
Ga0115099_108504184F103306N/AANIDEKTLLDERKVLEGDFNTMSDRIKQVEKDLVL*

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