Scaffold Ga0115099_10099194

Overview

Basic Information

• Taxon OID: 3300009543
• Scaffold ID: Ga0115099_10099194
• Source Dataset Name: Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_20Mar14_M2_3um Metatranscriptome (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5548
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (20.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 36.6882
  • Long. (^o): -122.386
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002321	Metagenome / Metatranscriptome	571	Y
F051863	Metagenome / Metatranscriptome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115099_100991943	F051863	N/A	MTKIEIINEIIVKKQQELKKLNVTKKKLEDSRVDAMFNVMQKYFGGEFTLDDVYISKPTYGYSGGSYEIKRPNKDYNYDKELMTIRFHENWKTSEFDGIETSLYSTSDNSQWELERIFTNGEVAKVLLDHGDDLLAEMNTVRLTNQEEIDDARTEVYKVESSITNLKSEINTIEINETTELLEGKGLVFEEGKKGSMDLRWDWTIRGIDSARILSKTASGKSCNIELKVYDREPVVYEKVRMSNVDSLIWQYRDRA*
Ga0115099_100991948	F002321	N/A	MELDFIKVKVMELDLNKEMAWVTFLDDGWETKWHPVLDDSGKQLEWGLHGEGVMELCRSRFNVKDNWISFGIAQTSQMLIKNSVRDNL*