Scaffold Ga0073899_10001233

Overview

Basic Information

• Taxon OID: 3300009540
• Scaffold ID: Ga0073899_10001233
• Source Dataset Name: Active sludge microbial communities from Klosterneuburg, Austria, studying microevolution and ecology of nitrifiers - Klosterneuburg WWTP active sludge metagenome KNB5-Ph
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23550
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge → Active Sludge And Wastewater Microbial Communities From Klosterneuburg, Austria

Source Dataset Sampling Location

• Location Name: Austria: Klosterneuburg
• Coordinates
  • Lat. (^o): 48.3
  • Long. (^o): 16.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012885	Metagenome / Metatranscriptome	276	Y
F072490	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073899_1000123313	F072490	GAG	MTITSLRPPFCFPLGLLALASWPGLAAADVVTGTVTPATAKAVVVDASGKTVAELKPGAYQLQLAPGRYNARCLAPAQREQEFLSLSEPVTVNVDCS*
Ga0073899_1000123323	F012885	GGAGG	MPYRIRWEGHGVYRRFFGVVTLGEFREANKEMRTDVRYEGIRYIISDYLEAQPAADITELDLKTCAEHERLYFYSSPDTVHAIVATDPKEVALARYYESLGVSPYCVADFATVADARGWIASNPRLGWNRPTQDAMAAAGS*