Scaffold Ga0129283_10031103

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0129283_10031103

Scaffold Ga0129283_10031103

Overview

Basic Information
Taxon OID	3300009537 Open in IMG/M
Scaffold ID	Ga0129283_10031103 Open in IMG/M
Source Dataset Name	Microbial community of beach aquifer porewater from Cape Shores, Lewes, Delaware, USA - D-2W
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Delaware
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2141
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Beach Aquifer Porewater → Microbial Role In Biogeochemical Cycling In A Beach Aquifer System

Source Dataset Sampling Location
Location Name	Cape Shores, Lewes, Delaware, USA
Coordinates	Lat. (^o)	38.7855	Long. (^o)	-75.1045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F015345	Metagenome / Metatranscriptome	255	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0129283_100311032	F015345	GAGG	LTTIDLFAIKEQVVAILKADTTNLYSATPTDKTKFRKIEAGAPSPKAIQEPPLPRCWVTSDTVVANVSPVTNIVSNASLGEEYDVRLLIYFVVEAKDGPKTEEDLDDFTKSILEQLNTNYDLRTPAGAEGTRVAEGSDVTQIADLPAQFKGDRVRGRVIRFRVTVRS*

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