Scaffold Ga0129283_10010781

Overview

Basic Information

• Taxon OID: 3300009537
• Scaffold ID: Ga0129283_10010781
• Source Dataset Name: Microbial community of beach aquifer porewater from Cape Shores, Lewes, Delaware, USA - D-2W
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Delaware
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3858
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Beach Aquifer Porewater → Microbial Role In Biogeochemical Cycling In A Beach Aquifer System

Source Dataset Sampling Location

• Location Name: Cape Shores, Lewes, Delaware, USA
• Coordinates
  • Lat. (^o): 38.7855
  • Long. (^o): -75.1045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038201	Metagenome / Metatranscriptome	166	N
F045645	Metagenome	152	N
F063304	Metagenome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0129283_100107813	F038201	N/A	MNQVASPAEQMESRASARSERMDVFARNVQFMVSQVAGEHAERTFKMLQKTFPGLRNFEQLQTFAKMYVNGGLRPLQLRPLPSDVDPHWLKGELALRFHAGMIVLGRDEKIVCRGPEAFGPFDSARAVSFSRQLSAESPTNDEHGHTLDPEQCVPAAVGIYPEID*
Ga0129283_100107814	F045645	N/A	MKLQETALRMLRSVAGVFPVRPILPDKVLTLRKGRRHGHELVQHEGATVQVVAIGDDKPGLLSFAAINGIPVKNYTDMIVPKPEPKINGKTVPGVPEVPELSM*
Ga0129283_100107815	F063304	GGA	MRIGSPTAAAQSPHVYNLLDQRLAQHGVVLHQLLKDYAASIPVQPTSPEELQEQVTSVFGKWSPEPAQRVMPDIALAQEHLRLLDEICKIQGPESAARLEATLFRVVANQFARNLGSPLRLPDESRLIPYSEVKPANAYSALAQRTALLGVQPHERVKDWVQSNRESFQHKPISDVGYLRLAQKFCGAWPAESALTDPFQKCVAGFLDGVALATNRGHAVVVQSSLVDTFARGIRRQVRELGLDRPAVAAPAISMA*