NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0129295_10594565

Scaffold Ga0129295_10594565


Overview

Basic Information
Taxon OID3300009536 Open in IMG/M
Scaffold IDGa0129295_10594565 Open in IMG/M
Source Dataset NameMarine microbial communities associated with Trichodesmium colonies (puff morphology) from Station ALOHA, North Pacific Subtropical Gyre ? E19
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)769
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Marine → Marine Microbial Communities Associated With Trichodesmium Colonies (Puff Morphology) From Station Aloha, North Pacific Subtropical Gyre

Source Dataset Sampling Location
Location NameNorth Pacific Subtropical Gyre
CoordinatesLat. (o)22.0Long. (o)-158.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006348Metagenome / Metatranscriptome375Y
F008889Metagenome / Metatranscriptome326Y

Sequences

Protein IDFamilyRBSSequence
Ga0129295_105945652F006348GGAGGMVTENTPYRNKKYIVEDIRFDSKFKTDDEIKDLEFKSLNGLGVWDARGRNEDERINDLWEKVQNYMGVYLTSLEYCNNPPHPLTAFK*
Ga0129295_105945653F008889N/AFMYTTEQFDKDVAGLRALIKMCDDLEKENNKKADALIKQINGENAFYWRAN*

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