Scaffold Ga0114919_10676139

Overview

Basic Information

• Taxon OID: 3300009529
• Scaffold ID: Ga0114919_10676139
• Source Dataset Name: Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 704
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: Black Sea
• Coordinates
  • Lat. (^o): 44.288
  • Long. (^o): 34.983
  • Depth (m): 2075

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021440	Metagenome / Metatranscriptome	219	Y
F069852	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114919_106761391	F069852	GGAGG	MKIKVTRQDIQSGEAGNSSECAIALALQRHFKTNCAYVSGNFDEDEPILKVDNIDLKVLKKDINKVCQFIDLFDDYVFNEDV
Ga0114919_106761393	F021440	AGGA	MNKKPTHFAVEDITFYGMDEDNEIITNDKGEEIKYRLKNDIRFKPLEYLCEDMTEEILEPIERKVA*