Scaffold Ga0114919_10478875

Overview

Basic Information

• Taxon OID: 3300009529
• Scaffold ID: Ga0114919_10478875
• Source Dataset Name: Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 860
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: Black Sea
• Coordinates
  • Lat. (^o): 44.288
  • Long. (^o): 34.983
  • Depth (m): 2075

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004549	Metagenome / Metatranscriptome	433	Y
F063163	Metagenome	130	Y
F081884	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114919_104788752	F004549	AGGAGG	MNIKKFKSVAVAIETYKLLKKIAAADDRSAGMQITYLVKQEAKKRKLEA*
Ga0114919_104788753	F081884	AGGAG	MRGPIINLNNYEEATEFLKTTDYIHSNHFKGYEGDTFPNLNMPWHLELEYWIDDGGYYDHFLIMKSKPKRTYPKVHAIDANCLPGDHEEKMMDFDYYLPGTRVEESLFKYSPNYMDRCSYEFVGFKKYIFDRDLGTEDKKKLKRDVEEVHSYESSHHLSGTRRKEAI*
Ga0114919_104788754	F063163	N/A	FTPSAAHEPEQSAFDFGDIEMQEHLSKLPHQLKETG*