Scaffold Ga0114919_10391413

Overview

Basic Information

• Taxon OID: 3300009529
• Scaffold ID: Ga0114919_10391413
• Source Dataset Name: Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 967
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: Black Sea
• Coordinates
  • Lat. (^o): 44.288
  • Long. (^o): 34.983
  • Depth (m): 2075

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002495	Metagenome / Metatranscriptome	554	Y
F005537	Metagenome / Metatranscriptome	397	Y
F068127	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114919_103914131	F068127	N/A	KLTALYSNWKKNNNSDDKIEKLFEQQQQSIKTNGGQNAKQW*
Ga0114919_103914132	F002495	GGAGG	MQNNGSGKQKDFVLFPYDANNEKAIKIDFSGNVTLDNGNKGTILGAKASSKDGKTKFVRVFAQIGVLFKGDDKFTGEMNYPDAGGQKGLIGWLNDEGTILSGYKNEYKPKQAKTQSKEIPF*
Ga0114919_103914134	F005537	AGG	MSDNVKFISEIERLLKEKQNDYGEFDHTSFIMSGILEKYLSVHNNCEVKVPLKLFGIFMIFLKLWRVMQSENYKKDSFDDING