Scaffold Ga0114919_10138155

Overview

Basic Information

• Taxon OID: 3300009529
• Scaffold ID: Ga0114919_10138155
• Source Dataset Name: Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1757
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: Black Sea
• Coordinates
  • Lat. (^o): 44.288
  • Long. (^o): 34.983
  • Depth (m): 2075

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028777	Metagenome / Metatranscriptome	190	Y
F035554	Metagenome / Metatranscriptome	172	N
F057387	Metagenome / Metatranscriptome	136	Y
F072865	Metagenome / Metatranscriptome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114919_101381553	F035554	AGGAGG	MAAKFLEDYVGVDDLIKQMNEQYPEGRLVSEIVEKTDKMVVFKTSFYTKDNVSPKCTGHGSKYSTEDHWLEKAEQKSRGRCLRVLLGSEPTAEEMEGIAPSKSKATKLIDSSGGQVKDLGSITYNPPTKKSLDEKVKDLEAEGLVEDISMKAQAVMDNIKDFALEITNQDLDLARNYTAQALGSMGISKTEVSINNLQSVKNKIQDIATMARAEIDKGE*
Ga0114919_101381554	F028777	AGGGGG	MLGIFGRNKPLSTFEIISLEKNISEAKKIRYILEVQGFICSLDPEFSTSGNLRKVVHRLNNSYNLSIYKEECNCDNKQKANLNLDGTPRKHYAYKKDWAS*
Ga0114919_101381555	F072865	N/A	MKNIIVKYIGVKNYKVSDDATLEEIHDMFQTDLSTVPVAFAKNIVPVAYAEEE*
Ga0114919_101381556	F057387	AGGAGG	MPELSQSLQAFWNNQIANDNDIKAAPFSGNCMFCNNAITEQDEDHSVCNTC*