Scaffold Ga0114919_10089891

Overview

Basic Information

• Taxon OID: 3300009529
• Scaffold ID: Ga0114919_10089891
• Source Dataset Name: Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2238
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: Black Sea
• Coordinates
  • Lat. (^o): 44.288
  • Long. (^o): 34.983
  • Depth (m): 2075

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001655	Metagenome / Metatranscriptome	656	Y
F002858	Metagenome / Metatranscriptome	525	Y
F023856	Metagenome / Metatranscriptome	208	Y
F024320	Metagenome / Metatranscriptome	206	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114919_100898911	F024320	N/A	MTFEEYEQGYYEGDSEDPSGPPEDPETHAMVEHLVEFDTEMYRLDSRRKYKGLSYKHLEMLMVELHGEEWRDAL*
Ga0114919_100898912	F023856	GGAGG	MRCRACDRILEESELTKKDTHGDFLDLCGICLSATASAGVDTETMQYYQYEIFTEDEKYDTLY*
Ga0114919_100898914	F002858	AGGAGG	MLIDEVSIYEVTGGDYSVYCFGYTQARTVTNDIMKRDPWGGIPFVIRKDLEVSFDDKGNVVMPRVVLDKILFLASDELPESEQ*
Ga0114919_100898917	F001655	AGGAGG	VKQPENSHTKHFGNDGPIGNDAEIIVYYEERGPAEPVLRIPFWYCKDELGMHEHFEAAVRRTAKALAESYTYWPEGYVHVQTIINEEYVNIV*