Scaffold Ga0114920_11041562

Overview

Basic Information

• Taxon OID: 3300009528
• Scaffold ID: Ga0114920_11041562
• Source Dataset Name: Deep subsurface microbial communities from South Pacific Ocean to uncover new lineages of life (NeLLi) - Chile_00310 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 561
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: South Pacific Ocean
• Coordinates
  • Lat. (^o): -44.283
  • Long. (^o): -75.865
  • Depth (m): 3285

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036268	Metagenome	170	Y
F085573	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114920_110415621	F085573	AGGA	MKGIKNMKDNFKLDHEAIGDCYYDVYTKPQKNVIRSAQDFKTIQLLLKDMAKILNGELTAEDYRNEIKQWVSERSDECYLDQGKIRRYDEK*
Ga0114920_110415622	F036268	AGGAGG	MKNKCEDCEGKGYYTDVISTGLSDPNDPYHEPHIERCDTCQVFSDDVKAKEYHEKHA*