NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114920_10021277

Scaffold Ga0114920_10021277


Overview

Basic Information
Taxon OID3300009528 Open in IMG/M
Scaffold IDGa0114920_10021277 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from South Pacific Ocean to uncover new lineages of life (NeLLi) - Chile_00310 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3662
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameSouth Pacific Ocean
CoordinatesLat. (o)-44.283Long. (o)-75.865Alt. (m)Depth (m)3285
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028082Metagenome192Y

Sequences

Protein IDFamilyRBSSequence
Ga0114920_100212774F028082GGAGGMSPKQNPDADITLNQLEGIQRSITNRLKQLQKRVRQDDKVIILELIQLTRENLYRKAQALCAERDSYKKKFQAICKILDK*

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