Scaffold Ga0115004_10259379

Overview

Basic Information

• Taxon OID: 3300009526
• Scaffold ID: Ga0115004_10259379
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1034
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032443	Metagenome	180	Y
F047361	Metagenome	150	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115004_102593791	F032443	N/A	DTLTDNLGFVGLAEDTQLRKLMTRVSQNANWANYFNDYEKNSANLNPIYTTGVDSDKASIIDSVLRDSGLPDVLDFVDLEAVANKASKDARIDTAGYDRLTVEQQISDACKQLNITTTNRSVYNQSESLLDNLNLRDRAIIAEQLDLNQDADTLS*
Ga0115004_102593792	F047361	AGGA	MTIKMKFSRNNTGSITMYDGEEIQHNHEKSFCLIGLEEKEPEQIIWTLNRLFPTDHVAVFLWPKGNGDFSNPMLKYACNHARFTVVDKKDTPLFLEEDVLIEKKTYAVTEQETWEDIFVRIKKERFPN*