Scaffold Ga0115004_10017783

Overview

Basic Information

• Taxon OID: 3300009526
• Scaffold ID: Ga0115004_10017783
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5005
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prasinovirus → unclassified Prasinovirus → Bathycoccus sp. RCC1105 virus BpV (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017731	Metagenome	239	N
F092353	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115004_100177831	F092353	GAGG	MVVTCKKNKGGTQKLPKYVTYTETEKLKKSNNKKNINPIKKFLIGIFGEEIDYDKFNKESKWSIRKEEDDHDRETKK*
Ga0115004_100177832	F017731	N/A	MKNNSMLRPPLSSTIFPRLNTPRRVHTNVVSMENGSVRLQNIEITIERTRGRCSLSYGRQEKAYIKVLNQLEKERSEILKSTQEKSYDNTNDNCSE*