Scaffold Ga0116225_1006694

Overview

Basic Information

• Taxon OID: 3300009524
• Scaffold ID: Ga0116225_1006694
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6679
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046144	Metagenome / Metatranscriptome	151	N
F093119	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116225_10066945	F046144	GGAGG	MFESPLKQEQQGSKTGLWIGIGLVVVLAVVALIYVTSKRSAKGPAPVATLTNVKGDPVHDLRVVSAKMDKDFSGTTALWSVDIKNSSAGLTYSNIAYETTYIGAENRVLLVNQGKIPITIAPGDDQSSQFRDTLYPTGTIWFKIKITDATAAK*
Ga0116225_10066946	F093119	N/A	MMPSRNRSAGVTAAAALAVLGSVIAFFVWGWLFLPLMNLPPDSHGHHSYQVHPITFALIALVPPFLVALGMRTGIGLFQLRRWARKAALWWASIALAFCLSMIALRPFETFAIPEHFVTEAESMKQLLAVSTVFMLLPVSIWWLFFFRLKSVVEQFEGRSTKATTSKS*