NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116221_1016471

Scaffold Ga0116221_1016471


Overview

Basic Information
Taxon OID3300009523 Open in IMG/M
Scaffold IDGa0116221_1016471 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4027
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001643Metagenome / Metatranscriptome659Y
F020070Metagenome226Y

Sequences

Protein IDFamilyRBSSequence
Ga0116221_10164713F020070AGGAMSATPTTCRASNVVVFGCVLVVIGACLGPSAFAQTSDSQAAEESANSWTTTTDLKSDDLLPERIPVRIIESHSQNGNRTLDKRSVEIRGTDGHFEPYQDVEKETLTLDASTVRITMRTFARDVNGKTALVQVTEEEKHILPGNNSNIVRVTYNPDVNGRLQAVQREIAQTKNISRDLEETNTTVMLTNINGDLAPAFKTHELRKRAANDTVETEKTTWLPDVNGKWQLTEIRRNIATEGAKDRGIEESVSRTNAEGRLGQISRVVSQETESTSGEKRSVVETYSIDVPGTTRDSSLHLVERTTSTESSSSTGKRATEQRVEQVNPGDPASGLRVSVLVDGKLVPEPSGEQSTVIIEARDSNGHFGIVSVDTTKADRIPTVQIQQTPAEKP*
Ga0116221_10164714F001643GGAMLGELMNIPTDTLIDMLYIILAGDVAISFSDATEIEQIQRELQRRGGEQCWSFQTVN*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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