Scaffold Ga0116218_1030049

Overview

Basic Information

• Taxon OID: 3300009522
• Scaffold ID: Ga0116218_1030049
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2438
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006757	Metagenome / Metatranscriptome	365	Y
F050089	Metagenome	145	Y
F073812	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116218_10300493	F050089	GAGG	MARQVFVFDAPPGREICDFCGNSATARLYACQNFVIPRTKHAVFQHESIGAWAACDRCAALIDAGHWSQLTDRAFRRFCKKHGVSRYEEFEVREQFREIHQLFKEHMIKEA*
Ga0116218_10300494	F073812	GGAG	MADPRRELESALSPLAWILNFIWDAVRLMFWFFMSPILIITWCFHHPVEARLYAVSAIPLLWNGNGGTRGLLVFFVLLIASLFGKTMHKICWGIIKLALLAGLVWYVYMIFKLA*
Ga0116218_10300495	F006757	N/A	MRDLAVLPPIKTKLRVALLNIAAYKDIPTEQLKQMACQLPGGTRVHLPDRVTTIAFLLGTRLVELN*